Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015787832.1_cds_XP_016515968.1_266
CDS Infomation

[gene=LOC107832592] [db_xref=GeneID:107832592] [protein=D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like] [protein_id=XP_016515968.1] [location=join(45277..45820,46446..46822,47037..47147,47227..47322,47736..48407)] [gbkey=CDS]
Sequence

ATGGCGACATCTGCTTCTTCGACTATAAATTTCTCAACCAAACCCTCCCGCACCTCTCTC
TCATGGAAAACACGCCTCGCTTCCTCCTCCGCTTTCGCCGTCGCCGCCGTGTCTCCCGGC
CGCGATCAGCGTCAGTACCCCCGTTTCGTTATATTCTCCATGGGCGCAAAACCTACGGTC
CTTGTAGCTGAAAAACTCGGCGAGGCAGGGGTAGATCTCCTAAAGGAATTCGCTGACGTG
GATTGTTCTTATAACCTGAGTCCTGAGGAACTCCGCAATAAGATCTCATTGTGTGATGCG
TTGATTGTACGTAGTGGTACGAAGGTGAGCCGTGAAGTCTTCGAGTCGTCCGGTGGACGG
CTTAAAGTTGTTGGACGAGCTGGTGTGGGAATTGATAATGTGGATCTTGCAGCTGCGACT
GAGCATGGATGCCTTGTTGTTAACGCGCCCACTGCTAACACTGTTGCTGCTGCGGAGCAC
GGAATCGCATTACTCACCGCTATGGCTCGAAATATTGCTCAAGCCGATGCTTCCGTGAAA
GCTGGAAAGTGGCTGAGAAACAAATATGTTGGTGTCTCCCTAGTTGGCAAAACACTTGCT
GTGATGGGTTTTGGGAAGGTTGGATCAGAAGTTGCCAGGCGAGCTAAGGGGCTTGGCATG
CATGTTATTGCTCATGATCCATATGCCCCTGCTGACCGTGCACGTGCCATTGGGGTGGAG
CTTGTTAGCTTTGATGAAGCCATTGCATCTGCAGATTTTATCTCACTTCACATGCCCCTT
ACACCTGCAACTAAGAAGGTCCTAAATGATGAAACTTTCGCAAAGATGAAAAAGGGAGTG
CGAATTGTCAATGTTGCTCGTGGAGGAGTGATTGATGAAGATGCTTTGGTCAGGGCACTT
GATGCTGGAATTGTGGCACAGGCAGCACTTGATGTCTTCACTGTGGAGCCGCCATCAAAG
GATAGTAAGTTGATTCAACATGAGAATGTAACTGCAACGCCTCATCTTGGTGCTAGTACT
ATGGAAGCGCAGGAAGGGGTGGCCATTGAGATAGCAGAAGCTGTTGTTGGAGCTTTGAAA
GGAGAGCTTGCTGCTACTGCTGTCAATGCTCCAATGGTGCCTGCCGAGGTGCTTTCTGAG
CTGAAGCCTTTTGTCGAACTGGCTGAAAAACTTGGTAGACTTGCTGTCCAACTAGTCACA
GGTGGAAGTGGTGTGAAATCAGTGAAAGTGACGTATGGCTCAGCTAGAGCACCTGATGAT
CTTGACACAAGATTGCTTCGTGCCATGATAACTAAAGGATTGATTGAGCCTATTTCCAGT
GCCTTTGTGAACTTGGTCAATGCAGATTTCACTGCTAAACAGAGAGGACTAAGAATAGCT
GAAGAAAGATCTCATCTAAATGGTTCACCAGAAAGTCCGCTCGAGTTCATTCGGGTTCAG
ATTGCCAATGTGGAGTCCAAATTTGCCAGTGCTATTTCTGATTCTGGAGAGATTAGAGTG
GAGGGCAGGGTAAAAGATGGAATCCCTCATTTGACTAAAGTGGGATCCTTTGAAGTGGAT
GTGAGCTTGGAAGGCAGCATCATTCTCTGCAGACAGGTTGATCAACCAGGAATGATCGGG
AAGGTGGGTAGCATCTTGTCTGAGGAGAATGTGAATGTAAGTTTCATGAGTGTTGGAAGG
ATTGCTCCAAGGAAGCACGCGGTTATGGCTATTGGGGTGGATGAGCAACCAAGCAAGGAG
TCATTGAAGAGGATTGGGGAAATTCCTGCTGTTGAGGAGTTTGTTTACCTTAAATTATAA

Peptide Sequence

PEP ID

XP_016515968.1
PEP Infomation

PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Nicotiana tabacum]
Sequence

MATSASSTINFSTKPSRTSLSWKTRLASSSAFAVAAVSPGRDQRQYPRFVIFSMGAKPTV
LVAEKLGEAGVDLLKEFADVDCSYNLSPEELRNKISLCDALIVRSGTKVSREVFESSGGR
LKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNIAQADASVK
AGKWLRNKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVE
LVSFDEAIASADFISLHMPLTPATKKVLNDETFAKMKKGVRIVNVARGGVIDEDALVRAL
DAGIVAQAALDVFTVEPPSKDSKLIQHENVTATPHLGASTMEAQEGVAIEIAEAVVGALK
GELAATAVNAPMVPAEVLSELKPFVELAEKLGRLAVQLVTGGSGVKSVKVTYGSARAPDD
LDTRLLRAMITKGLIEPISSAFVNLVNADFTAKQRGLRIAEERSHLNGSPESPLEFIRVQ
IANVESKFASAISDSGEIRVEGRVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIG
KVGSILSEENVNVSFMSVGRIAPRKHAVMAIGVDEQPSKESLKRIGEIPAVEEFVYLKL

Transcript Sequence

Gene sequence data has not been registered.